What we need is:
1) JmolApplet.jar (http://sourceforge.net/projects/jmol/)
2) Java script file (*.txt)
3) Molecular structure file (*.mol, *.pdb, *.xyz, etc)
1. HTML code (som.htm)
<head><title>Soil Organic Matter</title></head>
<body>
<applet mayscript="true" height="100%" width="100%" archive="JmolApplet.jar" code="JmolApplet" name="jmol">
<param value="true" name="progressbar">
<param value="blue" name="progresscolor">
<param value="this will take a while the first time!" name="boxmessage">
<param value="#112233" name="boxbgcolor">
<param value="#778899" name="boxfgcolor">
<param name="script" value="script som.txt">
<!-- som.txt includes "load som.mol; wireframe 40; spacefill 120" -->
</applet>
</body></html>
2. Java script file (som.txt)
load som.mol; wireframe 40; spacefill 120
3. Molecular structure file (som.mol)
e.g., http://virtual-museum.soils.wisc.edu/som/som.mol
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